Mir-153-P1

MirGeneDB ID

Ete-Mir-153-P1

Family name

MIR-153 (all species)

Seed

UGCAUAG

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-153-P1 Ami-Mir-153-P1 Asu-Mir-153 Bfl-Mir-153 Bla-Mir-153 Bpl-Mir-153 Bta-Mir-153-P1 Cfa-Mir-153-P1 Cgi-Mir-153 Cin-Mir-153 Cli-Mir-153-P1 Cmi-Mir-153-P1 Cpi-Mir-153-P1 Cpo-Mir-153-P1 Cte-Mir-153 Dma-Mir-153 Dno-Mir-153-P1 Dpu-Mir-153 Dre-Mir-153-P1a Gga-Mir-153-P1 Gja-Mir-153-P1 Gmo-Mir-153-P1a Gmo-Mir-153-P1b Hsa-Mir-153-P1 Isc-Mir-153 Lan-Mir-153 Lch-Mir-153-P1 Lgi-Mir-153 Loc-Mir-153-P1 Mal-Mir-153-P1a Mal-Mir-153-P1b Mdo-Mir-153-P1 Mml-Mir-153-P1 Mmu-Mir-153-P1 Mun-Mir-153-P1 Npo-Mir-153 Oan-Mir-153-P1 Obi-Mir-153 Ocu-Mir-153-P1 Ovu-Mir-153 Pbv-Mir-153-P1 Pfl-Mir-153 Pma-Mir-153-o1 Pmi-Mir-153 Rno-Mir-153-P1 Sha-Mir-153-P1 Sko-Mir-153 Sme-Mir-153 Spt-Mir-153-P1 Spu-Mir-153 Sto-Mir-153-P1 Tgu-Mir-153-P1 Tni-Mir-153-P1b Xbo-Mir-153 Xla-Mir-153-P1c Xla-Mir-153-P1d Xtr-Mir-153-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(echTel2)

JH980304: 26613928-26613988 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GACUUUGCCAGCUAAUUAGCGGUGGCCAGUGUCAUUUUUGUGAUGUUGCAGCUAGUAAUAUGAGCCCAGUUGCAUAGUCACAAAAGUGAUCAUUGGAAACUGUGACUCUGCUGCAGGGACA

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Structure

        10        20        30         40        50        60
GACUUUGCCAGCUAAUUA     GG      -|            GU       AGUAAU 
                  GCGGU  CCAGUG UCAUUUUUGUGAU  UGCAGCU      A
                  UGUCA  GGUUAC AGUGAAAACACUG  ACGUUGA      U
ACAGGGACGUCGUCUCAG     AA      U^            AU       CCCGAG 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ete-Mir-153-P1_5p*

mirBase accession

None

Sequence

0- GUCAUUUUUGUGAUGUUGCAGCU -23

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Mature sequence

Ete-Mir-153-P1_3p

mirBase accession

None

Sequence

39- UUGCAUAGUCACAAAAGUGAUC -61

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