MirGeneDB ID | Ete-Mir-1-P3 |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-1-P1
Ete-Mir-1-P2
|
Orthologues |
Aae-Mir-1
Aca-Mir-1-P3
Ami-Mir-1-P3
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Bta-Mir-1-P3
Cbr-Mir-1
Cel-Mir-1
Cfa-Mir-1-P3
Cgi-Mir-1
Cin-Mir-1
Cli-Mir-1-P3
Cmi-Mir-1-P3
Cpi-Mir-1-P3
Cpo-Mir-1-P3
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dno-Mir-1-P3
Dpu-Mir-1
Dre-Mir-1-P3
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Gga-Mir-1-P3
Gja-Mir-1-P3
Gmo-Mir-1-P3
Hme-Mir-1
Hsa-Mir-1-P3
Isc-Mir-1
Lan-Mir-1
Lch-Mir-1-P3
Lgi-Mir-1
Loc-Mir-1-P3
Mal-Mir-1-P3
Mdo-Mir-1-P3
Mml-Mir-1-P3
Mmu-Mir-1-P3
Mun-Mir-1-P3
Oan-Mir-1-P3
Obi-Mir-1
Ocu-Mir-1-P3
Ovu-Mir-1
Pbv-Mir-1-P3
Pfl-Mir-1
Pma-Mir-1-o3
Pmi-Mir-1
Rno-Mir-1-P3
Sha-Mir-1-P3
Sko-Mir-1
Spt-Mir-1-P3
Spu-Mir-1
Sto-Mir-1-P3
Tca-Mir-1
Tgu-Mir-1-P3
Tni-Mir-1-P3
Xbo-Mir-1
Xla-Mir-1-P3a
Xla-Mir-1-P3b
Xtr-Mir-1-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (echTel2) |
JH980408: 1070437-1070497 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CAGGUCCUGCCGGGACUCCCUGCUUGGGAGACAUCCUUCUUUAUAUGCCCAUAUGGACCUGCAAAGCUAUGGAAUGUAAAGAAGUAUGUGUCCCCGGCGGGACAGCUCUCCCGGGCGGGGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGGUCCUGCCGGGACUC--| U G C GC UGGACC
CCUGCU GGGA ACAU CUUCUUUAUAU CCAUA U
GGGCGG CCCU UGUA GAAGAAAUGUA GGUAU G
UGGGGCGGGCCCUCUCGACA^ C G U A- CGAAAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-1-P3_5p* |
mirBase accession | None |
Sequence |
0- ACAUCCUUCUUUAUAUGCCCAUA -23
Get sequence
|
Mature sequence |
Ete-Mir-1-P3_3p |
mirBase accession | None |
Sequence |
39- UGGAAUGUAAAGAAGUAUGUGU -61
Get sequence
|