MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-506-P1

Family name MIR-506 (all species)
Seed ACUCAGU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-201
Paralogues Mmu-Mir-506-P2  Mmu-Mir-506-P7  Mmu-Mir-506-P14  Mmu-Mir-506-P15a  Mmu-Mir-506-P15b1  Mmu-Mir-506-P15b2  Mmu-Mir-506-P15c1  Mmu-Mir-506-P15c2  Mmu-Mir-506-P15d  Mmu-Mir-506-P16  Mmu-Mir-506-P17  Mmu-Mir-506-P18  Mmu-Mir-506-P19  Mmu-Mir-506-P20  Mmu-Mir-506-P21  Mmu-Mir-506-P22  Mmu-Mir-506-P23  Mmu-Mir-506-P24  Mmu-Mir-506-P25  Mmu-Mir-506-P26  Mmu-Mir-506-P27 
Orthologues Bta-Mir-506-P1  Cfa-Mir-506-P1  Cpo-Mir-506-o1  Cpo-Mir-506-P1  Dno-Mir-506-P1  Hsa-Mir-506-P1  Mml-Mir-506-P1  Ocu-Mir-506-P1  Rno-Mir-506-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)
chrX: 67988099-67988156 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1)
Mir-506-P1 chrX: 67988099-67988156 [-] UCSC Ensembl
Mir-506-P2 chrX: 67988383-67988440 [-] UCSC Ensembl
Mir-506-P7 chrX: 68010114-68010170 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUACUUUCAAUGAUGCUGUGUACAGUACCUUACUCAGUAAGGCAUUGUUCUUCUAUAUUAAUAAAUGAACAGUGCCUUUCUGUGUAGGGUAAUGUGCAACAUGGACAACAUUUGUGGU
Get precursor sequence
Structure
        10          20        30        40        50        
CUACUUUCAAUGAUGCUG--|     G        U   U            UUCUAUA 
                    UGUACA UACCUUAC CAG AAGGCAUUGUUC       U
                    ACGUGU AUGGGAUG GUC UUCCGUGACAAG       U
UGGUGUUUACAACAGGUACA^     A        U   U            UAAAUAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-506-P1_5p

mirBase accessionMIMAT0000234
Sequence
0- UACUCAGUAAGGCAUUGUUCUUC -23
Get sequence
Proposed targets microrna.org: MIMAT0000234
TargetScanVert: mmu-miR-201-5p
miRDB: MIMAT0000234
Star sequence

Mmu-Mir-506-P1_3p*

mirBase accessionMIMAT0017001
Sequence
35- UGAACAGUGCCUUUCUGUGUAGG -58
Get sequence
Proposed targets TargetScanVert: mmu-miR-201-3p
miRDB: MIMAT0017001