Mir-506-P26

MirGeneDB ID

Mmu-Mir-506-P26

Family name

MIR-506 (all species)

Seed

AACUGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-883a

Paralogues

Mmu-Mir-506-P1 Mmu-Mir-506-P2 Mmu-Mir-506-P7 Mmu-Mir-506-P14 Mmu-Mir-506-P15a Mmu-Mir-506-P15b1 Mmu-Mir-506-P15b2 Mmu-Mir-506-P15c1 Mmu-Mir-506-P15c2 Mmu-Mir-506-P15d Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P21 Mmu-Mir-506-P22 Mmu-Mir-506-P23 Mmu-Mir-506-P24 Mmu-Mir-506-P25 Mmu-Mir-506-P27

Orthologues

Rno-Mir-506-P26

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66780767-66780824 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P26)

Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUAAUAAUAAUAAUUCGUGUGCACUAUAAUGCUGAGAGAAGUAGCAGUUACUUUAUUCUAUAAGUAACUGCAACAGCUCUCAGUAUUGUAAGGCUCAACAAACGCAGGGAUGGUAGC

Get precursor sequence

Structure

        10         20         30        40        50        
GAUAAUAAUAAUAAUUC-  GU-| AC              AA  A         UUAU 
                  GU   GC  UAUAAUGCUGAGAG  GU GCAGUUACU    U
                  CA   CG  AUGUUAUGACUCUC  CA CGUCAAUGA    C
CGAUGGUAGGGACGCAAA  ACU^ GA              GA  A         AUAU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-506-P26_5p*

mirBase accession

MIMAT0004848

Sequence

0- UGCUGAGAGAAGUAGCAGUUACU -23

Get sequence

Proposed targets

microrna.org: MIMAT0004848
TargetScanVert: mmu-miR-883a-5p
miRDB: MIMAT0004848

Mature sequence

Mmu-Mir-506-P26_3p

mirBase accession

MIMAT0004849

Sequence

35- UAACUGCAACAGCUCUCAGUAUU -58

Get sequence

Proposed targets

microrna.org: MIMAT0004849
TargetScanVert: mmu-miR-883a-3p
miRDB: MIMAT0004849