MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-9-P2

Family name MIR-9 (all species)
Seed CUUUGGU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-9-2
Paralogues Mmu-Mir-9-P1  Mmu-Mir-9-P3 
Orthologues Aca-Mir-9-P2  Ami-Mir-9-P2  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P2  Cfa-Mir-9-P2  Cin-Mir-9  Cli-Mir-9-P2  Cmi-Mir-9-P2  Cpi-Mir-9-P2  Cpo-Mir-9-P2  Cte-Mir-9  Dno-Mir-9-P2  Dre-Mir-9-P2a  Dre-Mir-9-P2b  Esc-Mir-9  Ete-Mir-9-P2  Gga-Mir-9-P2  Gja-Mir-9-P2  Gmo-Mir-9-P2b  Hme-Mir-9-o2  Hsa-Mir-9-P2  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P2  Lgi-Mir-9  Loc-Mir-9-P2  Mal-Mir-9-P2b  Mdo-Mir-9-P2  Mml-Mir-9-P2  Mun-Mir-9-P2  Npo-Mir-9  Oan-Mir-9-P2  Obi-Mir-9  Ocu-Mir-9-P2  Ovu-Mir-9  Pbv-Mir-9-P2  Pma-Mir-9-o2  Pmi-Mir-9  Rno-Mir-9-P2  Sha-Mir-9-P2  Spt-Mir-9-P2  Spu-Mir-9  Sto-Mir-9-P2  Tgu-Mir-9-P2  Tni-Mir-9-P2b  Xbo-Mir-9  Xla-Mir-9-P2c  Xla-Mir-9-P2d  Xtr-Mir-9-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mm10)		 chr13: 83738821-83738880 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCAGCCUUGUGAGGGAAGCGAGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGUAUUGGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAACUCCUUCAAGGUCACCGAGGAACGUU
Get precursor sequence
Structure
        10           20        30        40        50         
AGGCAGCCUUGUGAGGG---|  C     G   UC               G     GUGUA 
                    AAG GAGUU UUA  UUUGGUUAUCUAGCU UAUGA     U
                    UUC CUCAA AAU  AAGCCAAUAGAUCGA AUACU     U
UUGCAAGGAGCCACUGGAAC^  -     A   GA               A     UCUGG 
.       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-9-P2_5p
mirBase accessionMIMAT0000142
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000142
TargetScanVert: mmu-miR-9-5p
miRDB: MIMAT0000142
Co-mature sequence

Mmu-Mir-9-P2_3p
mirBase accessionMIMAT0000143
Sequence 
37- AUAAAGCUAGAUAACCGAAAGUA -60
Get sequence
Proposed targets microrna.org: MIMAT0000143
TargetScanVert: mmu-miR-9-3p
miRDB: MIMAT0000143