MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-9-P3

Family name MIR-9 (all species)
Seed CUUUGGU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-9-1
Paralogues Mmu-Mir-9-P1  Mmu-Mir-9-P2 
Orthologues Ami-Mir-9-P3  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cli-Mir-9-P3  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dno-Mir-9-P3  Dre-Mir-9-P3a  Esc-Mir-9  Ete-Mir-9-P3  Gga-Mir-9-P3  Gja-Mir-9-P3  Gmo-Mir-9-P3a  Gmo-Mir-9-P3b  Hme-Mir-9-o3  Hsa-Mir-9-P3  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P3  Lgi-Mir-9  Loc-Mir-9-P3  Mal-Mir-9-P3a  Mal-Mir-9-P3b  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mun-Mir-9-P3  Npo-Mir-9  Oan-Mir-9-P3-v1  Oan-Mir-9-P3-v2  Obi-Mir-9  Ocu-Mir-9-P3  Ovu-Mir-9  Pbv-Mir-9-P3  Pma-Mir-9-o3  Pmi-Mir-9  Rno-Mir-9-P3  Sha-Mir-9-P3  Spt-Mir-9-P3  Spu-Mir-9  Tgu-Mir-9-P3  Tni-Mir-9-P3a  Tni-Mir-9-P3b  Xbo-Mir-9  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xtr-Mir-9-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mm10)
chr3: 88215613-88215674 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P3)
Mir-3093 chr3: 88215186-88215247 [+] UCSC Ensembl
Mir-9-P3 chr3: 88215613-88215674 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGCGGCCAGGAGGCGGGGUUGGUUGUUAUCUUUGGUUAUCUAGCUGUAUGAGUGGUGUGGAGUCUUCAUAAAGCUAGAUAACCGAAAGUAAAAAUAACCCCAUACACUGCGCAGAGGGCC
Get precursor sequence
Structure
        10           20        30        40        50        60
GAGGCGGCCAGGAGGCG---|     GUUG   UC               G     GUGGUG 
                    GGGUUG    UUA  UUUGGUUAUCUAGCU UAUGA      U
                    CCCAAU    AAU  AAGCCAAUAGAUCGA AUACU      G
CCGGGAGACGCGUCACAUAC^     AAA-   GA               A     UCUGAG 
120       110       100         90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-9-P3_5p

mirBase accessionMIMAT0000142
Sequence
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000142
TargetScanVert: mmu-miR-9-5p
miRDB: MIMAT0000142
Co-mature sequence

Mmu-Mir-9-P3_3p

mirBase accessionMIMAT0000143
Sequence
39- AUAAAGCUAGAUAACCGAAAGUA -62
Get sequence
Proposed targets microrna.org: MIMAT0000143
TargetScanVert: mmu-miR-9-3p
miRDB: MIMAT0000143